Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX4O14627 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CDX4O14627 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX4O14627 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.13■□□□□ 0.33
CDX4O14627 HLA-J-202ENST00000469281 1241 ntBASIC17.13■□□□□ 0.33
CDX4O14627 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.13■□□□□ 0.33
CDX4O14627 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX4O14627 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX4O14627 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CDX4O14627 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CDX4O14627 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX4O14627 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX4O14627 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX4O14627 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CDX4O14627 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 AL121761.2-201ENST00000598007 1648 ntBASIC17.12■□□□□ 0.33
CDX4O14627 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.12■□□□□ 0.33
CDX4O14627 KLF4P1-201ENST00000412782 1185 ntBASIC17.12■□□□□ 0.33
CDX4O14627 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX4O14627 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.12■□□□□ 0.33
CDX4O14627 AC069262.1-201ENST00000539058 672 ntBASIC17.12■□□□□ 0.33
CDX4O14627 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.12■□□□□ 0.33
CDX4O14627 AC022145.2-201ENST00000598203 171 ntBASIC17.12■□□□□ 0.33
CDX4O14627 AL390955.2-201ENST00000603032 514 ntBASIC17.12■□□□□ 0.33
CDX4O14627 GGTLC5P-201ENST00000617623 998 ntBASIC17.12■□□□□ 0.33
CDX4O14627 LINC00628-201ENST00000628516 1289 ntBASIC17.12■□□□□ 0.33
CDX4O14627 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 AF228730.6-201ENST00000641497 218 ntBASIC17.12■□□□□ 0.33
CDX4O14627 AC084121.3-201ENST00000641716 218 ntBASIC17.12■□□□□ 0.33
CDX4O14627 AC105233.6-201ENST00000642093 218 ntBASIC17.12■□□□□ 0.33
CDX4O14627 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDX4O14627 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CDX4O14627 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDX4O14627 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDX4O14627 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.11■□□□□ 0.33
CDX4O14627 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX4O14627 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX4O14627 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 AP002414.1-201ENST00000391405 1147 ntBASIC17.11■□□□□ 0.33
CDX4O14627 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 AC023141.5-201ENST00000458585 616 ntBASIC17.11■□□□□ 0.33
CDX4O14627 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
CDX4O14627 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.11■□□□□ 0.33
CDX4O14627 AC093520.2-201ENST00000561830 333 ntBASIC17.11■□□□□ 0.33
CDX4O14627 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CDX4O14627 REXO1L3P-201ENST00000622202 1288 ntBASIC17.11■□□□□ 0.33
CDX4O14627 Z92544.3-201ENST00000624747 417 ntBASIC17.11■□□□□ 0.33
CDX4O14627 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDX4O14627 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDX4O14627 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX4O14627 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CDX4O14627 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX4O14627 AC003669.1-201ENST00000334569 611 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms