Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 BCAR1-209ENST00000546196 1340 ntBASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A6A6NMZ7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC007967.3-201ENST00000434308 558 ntBASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC107890.1-201ENST00000422478 521 ntBASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A6A6NMZ7 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 AC069335.1-201ENST00000489972 472 ntBASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 AC023141.13-201ENST00000604991 943 ntBASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 AC025580.3-201ENST00000617932 1424 ntBASIC16.02■□□□□ 0.16
COL6A6A6NMZ7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.02■□□□□ 0.15
COL6A6A6NMZ7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AC140878.1-201ENST00000565277 250 ntBASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 OR7E47P-204ENST00000575924 449 ntBASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AL158211.5-201ENST00000623583 2518 ntBASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A6A6NMZ7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms