Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.2■□□□□ 0.66
SIX2Q9NPC8 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 AL671277.2-201ENST00000458060 996 ntBASIC19.19■□□□□ 0.66
SIX2Q9NPC8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 LINC01451-201ENST00000623792 534 ntBASIC19.19■□□□□ 0.66
SIX2Q9NPC8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SIX2Q9NPC8 FZD10-202ENST00000539839 3282 ntBASIC19.19■□□□□ 0.66
SIX2Q9NPC8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.18■□□□□ 0.66
SIX2Q9NPC8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SIX2Q9NPC8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 CROCCP2-202ENST00000412962 2773 ntBASIC19.17■□□□□ 0.66
SIX2Q9NPC8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 TMPOP1-202ENST00000424642 1267 ntBASIC19.17■□□□□ 0.66
SIX2Q9NPC8 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.17■□□□□ 0.66
SIX2Q9NPC8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SIX2Q9NPC8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 AC080080.1-201ENST00000625121 2420 ntBASIC19.16■□□□□ 0.66
SIX2Q9NPC8 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX2Q9NPC8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms