Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 FAM185BP-201ENST00000443595 716 ntBASIC16.5■□□□□ 0.23
CHD8Q9HCK8 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 AC132938.5-201ENST00000624980 1813 ntBASIC16.5■□□□□ 0.23
CHD8Q9HCK8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD8Q9HCK8 GNAS-203ENST00000306120 1878 ntBASIC16.49■□□□□ 0.23
CHD8Q9HCK8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 TSSK5P-201ENST00000423978 907 ntBASIC16.49■□□□□ 0.23
CHD8Q9HCK8 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 AC119751.2-201ENST00000504529 210 ntBASIC16.49■□□□□ 0.23
CHD8Q9HCK8 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.49■□□□□ 0.23
CHD8Q9HCK8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD8Q9HCK8 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 AD001527.2-201ENST00000622994 785 ntBASIC16.48■□□□□ 0.23
CHD8Q9HCK8 AC005082.1-201ENST00000413042 2259 ntBASIC16.48■□□□□ 0.23
CHD8Q9HCK8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 AL355306.1-201ENST00000415580 579 ntBASIC16.48■□□□□ 0.23
CHD8Q9HCK8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 LINC01225-203ENST00000563550 1244 ntBASIC16.48■□□□□ 0.23
CHD8Q9HCK8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 MIR6727-201ENST00000620702 65 ntBASIC16.48■□□□□ 0.23
CHD8Q9HCK8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHD8Q9HCK8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AC022144.1-201ENST00000602255 1580 ntBASIC16.47■□□□□ 0.23
CHD8Q9HCK8 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AC092933.1-201ENST00000393644 945 ntBASIC16.47■□□□□ 0.23
CHD8Q9HCK8 DGCR5-201ENST00000399539 862 ntBASIC16.47■□□□□ 0.23
CHD8Q9HCK8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.47■□□□□ 0.23
CHD8Q9HCK8 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms