Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
NKX3-1Q99801 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 AP003041.3-201ENST00000527151 707 ntBASIC15.65■□□□□ 0.1
NKX3-1Q99801 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 DGCR10-201ENST00000609839 495 ntBASIC15.65■□□□□ 0.1
NKX3-1Q99801 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 AC008894.3-201ENST00000624324 3103 ntBASIC15.65■□□□□ 0.1
NKX3-1Q99801 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NKX3-1Q99801 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX3-1Q99801 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.64■□□□□ 0.1
NKX3-1Q99801 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.64■□□□□ 0.1
NKX3-1Q99801 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.64■□□□□ 0.1
NKX3-1Q99801 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.1
NKX3-1Q99801 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 AL390955.1-201ENST00000428694 934 ntBASIC15.64■□□□□ 0.09
NKX3-1Q99801 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 CR769767.2-201ENST00000622735 460 ntBASIC15.64■□□□□ 0.09
NKX3-1Q99801 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX3-1Q99801 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX3-1Q99801 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 AL024508.2-201ENST00000607749 1894 ntBASIC15.63■□□□□ 0.09
NKX3-1Q99801 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX3-1Q99801 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX3-1Q99801 BX088651.1-201ENST00000540551 451 ntBASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms