Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 HCG4P8-203ENST00000443049 980 ntBASIC17.78■□□□□ 0.44
VPS35Q96QK1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 Z69720.1-201ENST00000601483 472 ntBASIC17.78■□□□□ 0.44
VPS35Q96QK1 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VPS35Q96QK1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS35Q96QK1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 LINC00265-3P-201ENST00000447588 903 ntBASIC17.77■□□□□ 0.44
VPS35Q96QK1 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS35Q96QK1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS35Q96QK1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.77■□□□□ 0.43
VPS35Q96QK1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VPS35Q96QK1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS35Q96QK1 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.77■□□□□ 0.43
VPS35Q96QK1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS35Q96QK1 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS35Q96QK1 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 AC012615.1-201ENST00000565797 1299 ntBASIC17.76■□□□□ 0.43
VPS35Q96QK1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS35Q96QK1 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms