Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC022210.1-201ENST00000449856 793 ntBASIC18.01■□□□□ 0.47
TTC28Q96AY4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AL158211.3-201ENST00000607385 239 ntBASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC010460.3-201ENST00000511359 1579 ntBASIC18.01■□□□□ 0.47
TTC28Q96AY4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC18.01■□□□□ 0.47
TTC28Q96AY4 AC092506.1-202ENST00000401022 528 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 AL020989.1-201ENST00000422979 469 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18■□□□□ 0.47
TTC28Q96AY4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18■□□□□ 0.47
TTC28Q96AY4 AL135744.1-201ENST00000565098 629 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TTC28Q96AY4 ACTL9-202ENST00000612068 1252 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18■□□□□ 0.47
TTC28Q96AY4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 AC132938.5-201ENST00000624980 1813 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18■□□□□ 0.47
TTC28Q96AY4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18■□□□□ 0.47
TTC28Q96AY4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18■□□□□ 0.47
TTC28Q96AY4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
TTC28Q96AY4 AC092667.1-201ENST00000434301 2586 ntBASIC18■□□□□ 0.47
TTC28Q96AY4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18■□□□□ 0.47
TTC28Q96AY4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 AKAP8P1-201ENST00000434743 1349 ntBASIC17.99■□□□□ 0.47
TTC28Q96AY4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 AC099568.2-201ENST00000609194 695 ntBASIC17.99■□□□□ 0.47
TTC28Q96AY4 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 COX11-210ENST00000639671 696 ntBASIC17.99■□□□□ 0.47
TTC28Q96AY4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 AL353779.1-201ENST00000434793 351 ntBASIC17.99■□□□□ 0.47
TTC28Q96AY4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 AC004233.3-201ENST00000607794 1269 ntBASIC17.99■□□□□ 0.47
TTC28Q96AY4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.99■□□□□ 0.47
TTC28Q96AY4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TTC28Q96AY4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 MIR149-201ENST00000384879 89 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 RBPMS2P1-201ENST00000437762 623 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 MIR6869-201ENST00000619434 62 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 KRT8P44-201ENST00000441609 1350 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 AC129492.6-201ENST00000611383 1305 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 AC112492.5-201ENST00000421897 457 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 AL671277.1-201ENST00000429656 993 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TTC28Q96AY4 AC122714.2-201ENST00000502787 707 ntBASIC17.98■□□□□ 0.47
TTC28Q96AY4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
TTC28Q96AY4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms