Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC1BQ8NDV3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 AC122714.2-201ENST00000502787 707 ntBASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC1BQ8NDV3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 AL020989.1-201ENST00000422979 469 ntBASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 AC084346.2-201ENST00000607097 949 ntBASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SMC1BQ8NDV3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 AL805961.1-202ENST00000641562 540 ntBASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SMC1BQ8NDV3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 ARSEP1-201ENST00000420443 635 ntBASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 KLF2P3-201ENST00000451977 1087 ntBASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 AL596325.1-201ENST00000563991 1082 ntBASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 AC025048.6-201ENST00000634326 1161 ntBASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.1■□□□□ 0.97
SMC1BQ8NDV3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 TUBB3P1-201ENST00000405796 1332 ntBASIC21.09■□□□□ 0.97
SMC1BQ8NDV3 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms