Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 MMP23A-201ENST00000234610 1017 ntBASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 AC087499.1-201ENST00000418141 1075 ntBASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ZNF540Q8NDQ6 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AL139384.1-201ENST00000612143 3047 ntBASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 FAM197Y1-201ENST00000421178 764 ntBASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 KSR1P1-201ENST00000446298 240 ntBASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AC097493.4-201ENST00000641197 219 ntBASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ZNF540Q8NDQ6 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 UNC93B2-201ENST00000285383 730 ntBASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ZNF540Q8NDQ6 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms