Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 KRT18P67-201ENST00000432816 1264 ntBASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SH3RF1Q7Z6J0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 GUSBP12-201ENST00000513727 720 ntBASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 AL049840.3-201ENST00000602669 611 ntBASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 AL024508.2-201ENST00000607749 1894 ntBASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 PMS2P7-201ENST00000506558 1336 ntBASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SH3RF1Q7Z6J0 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 AP000997.3-201ENST00000623333 2250 ntBASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 FAM220CP-201ENST00000395253 831 ntBASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RNPS1P1-201ENST00000507437 918 ntBASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 TERC-201ENST00000602385 541 ntBASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SH3RF1Q7Z6J0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AC134043.2-201ENST00000624206 2238 ntBASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 BX842568.4-201ENST00000421222 227 ntBASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AC073648.2-201ENST00000510116 352 ntBASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms