Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC236430.1-201ENST00000402231 743 ntBASIC18.83■□□□□ 0.61
CHD9Q3L8U1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 AC096734.2-201ENST00000562054 433 ntBASIC18.83■□□□□ 0.61
CHD9Q3L8U1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHD9Q3L8U1 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.83■□□□□ 0.6
CHD9Q3L8U1 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.83■□□□□ 0.6
CHD9Q3L8U1 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AL627223.1-201ENST00000416693 442 ntBASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AC004835.2-201ENST00000603762 682 ntBASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AC099522.2-201ENST00000607001 744 ntBASIC18.83■□□□□ 0.6
CHD9Q3L8U1 AC092919.2-201ENST00000623631 1645 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC100803.2-201ENST00000562459 1963 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC055876.3-201ENST00000431496 288 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC068137.2-201ENST00000605408 478 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC138649.4-201ENST00000612222 287 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC009093.7-201ENST00000623853 1223 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC008761.3-201ENST00000624803 892 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 PMS2P4-201ENST00000412466 1052 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RPS15P9-201ENST00000494093 319 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 AC004449.1-201ENST00000564240 433 ntBASIC18.82■□□□□ 0.6
CHD9Q3L8U1 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHD9Q3L8U1 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 KLF4P1-201ENST00000412782 1185 ntBASIC18.81■□□□□ 0.6
CHD9Q3L8U1 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 AC018445.3-201ENST00000624177 1945 ntBASIC18.81■□□□□ 0.6
CHD9Q3L8U1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD9Q3L8U1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 AC074386.1-202ENST00000463561 864 ntBASIC18.8■□□□□ 0.6
CHD9Q3L8U1 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.8■□□□□ 0.6
CHD9Q3L8U1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms