Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 AC233702.3-201ENST00000578656 1387 ntBASIC19.18■□□□□ 0.66
VCPP55072 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 AC099343.3-201ENST00000605834 2503 ntBASIC19.17■□□□□ 0.66
VCPP55072 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VCPP55072 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 FAM197Y8-203ENST00000450145 560 ntBASIC19.17■□□□□ 0.66
VCPP55072 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.17■□□□□ 0.66
VCPP55072 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.17■□□□□ 0.66
VCPP55072 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.17■□□□□ 0.66
VCPP55072 AC055717.3-201ENST00000622967 595 ntBASIC19.17■□□□□ 0.66
VCPP55072 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VCPP55072 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 AC093677.2-201ENST00000600169 1863 ntBASIC19.17■□□□□ 0.66
VCPP55072 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.17■□□□□ 0.66
VCPP55072 AC034236.2-201ENST00000606662 1610 ntBASIC19.17■□□□□ 0.66
VCPP55072 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VCPP55072 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.17■□□□□ 0.66
VCPP55072 AC243591.1-201ENST00000452967 1364 ntBASIC19.17■□□□□ 0.66
VCPP55072 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
VCPP55072 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.16■□□□□ 0.66
VCPP55072 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.16■□□□□ 0.66
VCPP55072 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 Z83836.1-201ENST00000624605 1642 ntBASIC19.16■□□□□ 0.66
VCPP55072 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
VCPP55072 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
VCPP55072 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.16■□□□□ 0.66
VCPP55072 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 AC148477.8-201ENST00000624298 468 ntBASIC19.16■□□□□ 0.66
VCPP55072 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.16■□□□□ 0.66
VCPP55072 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
VCPP55072 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 HOXB1-202ENST00000577092 1414 ntBASIC19.16■□□□□ 0.66
VCPP55072 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VCPP55072 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
VCPP55072 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.15■□□□□ 0.66
VCPP55072 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.15■□□□□ 0.66
VCPP55072 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.15■□□□□ 0.66
VCPP55072 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.15■□□□□ 0.66
VCPP55072 AC104390.1-201ENST00000555663 520 ntBASIC19.15■□□□□ 0.66
VCPP55072 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
VCPP55072 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.15■□□□□ 0.66
VCPP55072 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VCPP55072 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms