Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HOXA3O43365 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA3O43365 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA3O43365 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA3O43365 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXA3O43365 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXA3O43365 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.4□□□□□ -0.11
HOXA3O43365 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HOXA3O43365 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA3O43365 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HOXA3O43365 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA3O43365 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.39□□□□□ -0.11
HOXA3O43365 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HOXA3O43365 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.39□□□□□ -0.11
HOXA3O43365 SLC25A1P1-201ENST00000528351 927 ntBASIC14.39□□□□□ -0.11
HOXA3O43365 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.39□□□□□ -0.11
HOXA3O43365 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
HOXA3O43365 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.39□□□□□ -0.11
HOXA3O43365 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 AC011467.2-201ENST00000598425 242 ntBASIC14.39□□□□□ -0.11
HOXA3O43365 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXA3O43365 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA3O43365 TNXA-203ENST00000507684 2038 ntBASIC14.39□□□□□ -0.11
HOXA3O43365 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXA3O43365 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXA3O43365 GMCL1P1-201ENST00000463439 1581 ntBASIC14.39□□□□□ -0.11
HOXA3O43365 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA3O43365 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HOXA3O43365 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
HOXA3O43365 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA3O43365 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA3O43365 AC018712.1-201ENST00000455767 687 ntBASIC14.38□□□□□ -0.11
HOXA3O43365 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA3O43365 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA3O43365 AC112698.1-201ENST00000510299 916 ntBASIC14.38□□□□□ -0.11
HOXA3O43365 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA3O43365 AL671883.3-201ENST00000603274 991 ntBASIC14.38□□□□□ -0.11
HOXA3O43365 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXA3O43365 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
HOXA3O43365 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HOXA3O43365 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXA3O43365 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXA3O43365 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXA3O43365 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
HOXA3O43365 AC243591.1-201ENST00000452967 1364 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 AP000974.1-201ENST00000623909 2387 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HOXA3O43365 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.37□□□□□ -0.11
HOXA3O43365 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HOXA3O43365 RPS2P28-201ENST00000314255 741 ntBASIC14.37□□□□□ -0.11
HOXA3O43365 MIR574-201ENST00000385209 96 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms