Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
MSH4O15457 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
MSH4O15457 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH4O15457 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH4O15457 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH4O15457 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH4O15457 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH4O15457 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
MSH4O15457 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH4O15457 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.08■□□□□ 0.81
MSH4O15457 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.08■□□□□ 0.81
MSH4O15457 AC111152.3-201ENST00000569699 673 ntBASIC20.08■□□□□ 0.81
MSH4O15457 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH4O15457 AL591684.3-201ENST00000605187 298 ntBASIC20.08■□□□□ 0.81
MSH4O15457 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH4O15457 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
MSH4O15457 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
MSH4O15457 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
MSH4O15457 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH4O15457 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH4O15457 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH4O15457 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH4O15457 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.8
MSH4O15457 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 NOC2LP1-202ENST00000452600 2235 ntBASIC20.07■□□□□ 0.8
MSH4O15457 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
MSH4O15457 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
MSH4O15457 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH4O15457 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH4O15457 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH4O15457 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH4O15457 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH4O15457 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH4O15457 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.07■□□□□ 0.8
MSH4O15457 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.07■□□□□ 0.8
MSH4O15457 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.07■□□□□ 0.8
MSH4O15457 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.07■□□□□ 0.8
MSH4O15457 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH4O15457 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.07■□□□□ 0.8
MSH4O15457 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.07■□□□□ 0.8
MSH4O15457 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MSH4O15457 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 AC007613.1-201ENST00000572811 2597 ntBASIC20.06■□□□□ 0.8
MSH4O15457 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 AC020763.4-201ENST00000623414 4170 ntBASIC20.06■□□□□ 0.8
MSH4O15457 AKR1C7P-201ENST00000305623 895 ntBASIC20.06■□□□□ 0.8
MSH4O15457 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH4O15457 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 EMBP1-201ENST00000458200 901 ntBASIC20.06■□□□□ 0.8
MSH4O15457 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH4O15457 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.06■□□□□ 0.8
MSH4O15457 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.06■□□□□ 0.8
MSH4O15457 RN7SL510P-201ENST00000581311 263 ntBASIC20.06■□□□□ 0.8
MSH4O15457 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 AL121894.2-201ENST00000602977 491 ntBASIC20.06■□□□□ 0.8
MSH4O15457 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
MSH4O15457 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
MSH4O15457 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MSH4O15457 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
MSH4O15457 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms