Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USH1CQ9Y6N9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 UBALD1-205ENST00000590891 2641 ntBASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 MIR564-202ENST00000385049 94 ntBASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 KRASP1-201ENST00000407852 552 ntBASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 AC004951.3-201ENST00000418645 1148 ntBASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 NIFKP9-201ENST00000419265 221 ntBASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
USH1CQ9Y6N9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
USH1CQ9Y6N9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
USH1CQ9Y6N9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 AL023875.1-201ENST00000640777 796 ntBASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 KRT8P50-201ENST00000562022 1438 ntBASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USH1CQ9Y6N9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 PCDHB19P-201ENST00000570871 2371 ntBASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 AC239809.2-201ENST00000415381 517 ntBASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 KRT17P3-201ENST00000420566 1262 ntBASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 AC233263.1-201ENST00000578059 224 ntBASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USH1CQ9Y6N9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms