Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRERF1Q96PN7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AP002469.2-201ENST00000531724 424 ntBASIC20.8■□□□□ 0.92
TRERF1Q96PN7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 REXO1L6P-202ENST00000619970 1078 ntBASIC20.8■□□□□ 0.92
TRERF1Q96PN7 AC099398.1-201ENST00000567919 2776 ntBASIC20.8■□□□□ 0.92
TRERF1Q96PN7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.8■□□□□ 0.92
TRERF1Q96PN7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 AC096582.2-201ENST00000510860 516 ntBASIC20.79■□□□□ 0.92
TRERF1Q96PN7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 MIR5100-201ENST00000579544 119 ntBASIC20.79■□□□□ 0.92
TRERF1Q96PN7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 AC005336.2-201ENST00000593183 939 ntBASIC20.79■□□□□ 0.92
TRERF1Q96PN7 AC009154.2-201ENST00000621177 724 ntBASIC20.79■□□□□ 0.92
TRERF1Q96PN7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 AC020916.1-201ENST00000587762 1774 ntBASIC20.79■□□□□ 0.92
TRERF1Q96PN7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRERF1Q96PN7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 SAPCD2P3-201ENST00000455031 850 ntBASIC20.78■□□□□ 0.92
TRERF1Q96PN7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 AF238378.1-201ENST00000526806 358 ntBASIC20.78■□□□□ 0.92
TRERF1Q96PN7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 AL591684.3-201ENST00000605187 298 ntBASIC20.78■□□□□ 0.92
TRERF1Q96PN7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRERF1Q96PN7 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.77■□□□□ 0.92
TRERF1Q96PN7 MTCL1P1-201ENST00000446207 792 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms