Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CFAP54Q96N23 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.48■□□□□ 0.39
CFAP54Q96N23 CU639417.3-201ENST00000624240 1404 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 AC067863.1-201ENST00000494933 530 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CFAP54Q96N23 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CFAP54Q96N23 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 AL627223.1-201ENST00000416693 442 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 BX005266.1-201ENST00000473402 457 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CFAP54Q96N23 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.47■□□□□ 0.39
CFAP54Q96N23 AL121761.2-201ENST00000598007 1648 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 SIGLEC16-201ENST00000599858 1437 ntBASIC17.47■□□□□ 0.39
CFAP54Q96N23 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CFAP54Q96N23 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 MIR4751-201ENST00000578027 74 ntBASIC17.46■□□□□ 0.39
CFAP54Q96N23 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 IRX1P1-201ENST00000438849 1838 ntBASIC17.46■□□□□ 0.39
CFAP54Q96N23 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 OR7E47P-204ENST00000575924 449 ntBASIC17.46■□□□□ 0.39
CFAP54Q96N23 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.46■□□□□ 0.39
CFAP54Q96N23 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CFAP54Q96N23 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.46■□□□□ 0.38
CFAP54Q96N23 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CFAP54Q96N23 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CFAP54Q96N23 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CFAP54Q96N23 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.45■□□□□ 0.38
CFAP54Q96N23 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 AL662799.1-202ENST00000614205 422 ntBASIC17.45■□□□□ 0.38
CFAP54Q96N23 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CFAP54Q96N23 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CFAP54Q96N23 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 CRYGEP-201ENST00000412192 528 ntBASIC17.45■□□□□ 0.38
CFAP54Q96N23 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 FO538757.1-201ENST00000623083 1397 ntBASIC17.45■□□□□ 0.38
CFAP54Q96N23 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CFAP54Q96N23 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CFAP54Q96N23 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.44■□□□□ 0.38
CFAP54Q96N23 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms