Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.42■□□□□ 0.54
SKA1Q96BD8 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SKA1Q96BD8 AC079602.3-201ENST00000623931 403 ntBASIC18.42■□□□□ 0.54
SKA1Q96BD8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.42■□□□□ 0.54
SKA1Q96BD8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.42■□□□□ 0.54
SKA1Q96BD8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SKA1Q96BD8 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 SLC25A6P5-201ENST00000435663 894 ntBASIC18.41■□□□□ 0.54
SKA1Q96BD8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 AC010240.3-201ENST00000607688 395 ntBASIC18.41■□□□□ 0.54
SKA1Q96BD8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.41■□□□□ 0.54
SKA1Q96BD8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SKA1Q96BD8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 MIR564-202ENST00000385049 94 ntBASIC18.4■□□□□ 0.54
SKA1Q96BD8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 MIR3180-1-201ENST00000580374 94 ntBASIC18.4■□□□□ 0.54
SKA1Q96BD8 RN7SL510P-201ENST00000581311 263 ntBASIC18.4■□□□□ 0.54
SKA1Q96BD8 MIR3180-3-201ENST00000584616 94 ntBASIC18.4■□□□□ 0.54
SKA1Q96BD8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.4■□□□□ 0.54
SKA1Q96BD8 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SKA1Q96BD8 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SKA1Q96BD8 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SKA1Q96BD8 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SKA1Q96BD8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 AC034236.2-201ENST00000606662 1610 ntBASIC18.39■□□□□ 0.53
SKA1Q96BD8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 AC090616.6-201ENST00000582640 721 ntBASIC18.39■□□□□ 0.53
SKA1Q96BD8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 AL121772.3-201ENST00000610840 674 ntBASIC18.39■□□□□ 0.53
SKA1Q96BD8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.39■□□□□ 0.53
SKA1Q96BD8 AL499627.1-201ENST00000569373 2188 ntBASIC18.39■□□□□ 0.53
SKA1Q96BD8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SKA1Q96BD8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms