Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ZNF540Q8NDQ6 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ZNF540Q8NDQ6 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 PHGDH-209ENST00000641074 1780 ntBASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AC133561.5-201ENST00000635547 218 ntBASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ZNF540Q8NDQ6 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AL121761.2-201ENST00000598007 1648 ntBASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AL355075.4-201ENST00000554988 638 ntBASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
ZNF540Q8NDQ6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms