Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 KRT8P32-201ENST00000512863 1461 ntBASIC17.24■□□□□ 0.35
PPP4R4Q6NUP7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 MMP23A-201ENST00000234610 1017 ntBASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PPP4R4Q6NUP7 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 AL357033.4-201ENST00000617703 1807 ntBASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 Z85996.1-201ENST00000494644 937 ntBASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 AC116562.2-201ENST00000507042 360 ntBASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
PPP4R4Q6NUP7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 LINC00602-201ENST00000629776 2065 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AC087499.1-201ENST00000418141 1075 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 ECEL1P3-201ENST00000427961 737 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AC091390.4-202ENST00000476426 537 ntBASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PPP4R4Q6NUP7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms