Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
KRT39Q6A163 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
KRT39Q6A163 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
KRT39Q6A163 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
KRT39Q6A163 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
KRT39Q6A163 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.38■□□□□ 0.69
KRT39Q6A163 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
KRT39Q6A163 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.38■□□□□ 0.69
KRT39Q6A163 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.38■□□□□ 0.69
KRT39Q6A163 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
KRT39Q6A163 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC19.38■□□□□ 0.69
KRT39Q6A163 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.38■□□□□ 0.69
KRT39Q6A163 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
KRT39Q6A163 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.38■□□□□ 0.69
KRT39Q6A163 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.38■□□□□ 0.69
KRT39Q6A163 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
KRT39Q6A163 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.38■□□□□ 0.69
KRT39Q6A163 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
KRT39Q6A163 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 KRT8P47-201ENST00000604727 1398 ntBASIC19.37■□□□□ 0.69
KRT39Q6A163 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 MTCL1P1-201ENST00000446207 792 ntBASIC19.37■□□□□ 0.69
KRT39Q6A163 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.37■□□□□ 0.69
KRT39Q6A163 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.37■□□□□ 0.69
KRT39Q6A163 AC116407.2-201ENST00000613639 860 ntBASIC19.37■□□□□ 0.69
KRT39Q6A163 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
KRT39Q6A163 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
KRT39Q6A163 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
KRT39Q6A163 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.36■□□□□ 0.69
KRT39Q6A163 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.36■□□□□ 0.69
KRT39Q6A163 GUSBP12-201ENST00000513727 720 ntBASIC19.36■□□□□ 0.69
KRT39Q6A163 KRT8P26-201ENST00000534154 1276 ntBASIC19.36■□□□□ 0.69
KRT39Q6A163 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 AC116407.4-201ENST00000623319 1061 ntBASIC19.36■□□□□ 0.69
KRT39Q6A163 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 HTR7P1-202ENST00000624664 4411 ntBASIC19.36■□□□□ 0.69
KRT39Q6A163 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.36■□□□□ 0.69
KRT39Q6A163 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.36■□□□□ 0.69
KRT39Q6A163 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
KRT39Q6A163 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.35■□□□□ 0.69
KRT39Q6A163 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
KRT39Q6A163 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms