Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SF3A1Q15459 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.74■□□□□ 0.91
SF3A1Q15459 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.74■□□□□ 0.91
SF3A1Q15459 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 AL138966.2-201ENST00000621997 464 ntBASIC20.74■□□□□ 0.91
SF3A1Q15459 AL157888.1-201ENST00000631930 593 ntBASIC20.74■□□□□ 0.91
SF3A1Q15459 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
SF3A1Q15459 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SF3A1Q15459 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SF3A1Q15459 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SF3A1Q15459 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SF3A1Q15459 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SF3A1Q15459 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 AC092865.7-201ENST00000641832 219 ntBASIC20.73■□□□□ 0.91
SF3A1Q15459 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SF3A1Q15459 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 AC132938.6-201ENST00000623828 1655 ntBASIC20.73■□□□□ 0.91
SF3A1Q15459 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SF3A1Q15459 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SF3A1Q15459 KRT18P55-202ENST00000578578 1546 ntBASIC20.73■□□□□ 0.91
SF3A1Q15459 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SF3A1Q15459 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SF3A1Q15459 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SF3A1Q15459 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SF3A1Q15459 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.72■□□□□ 0.91
SF3A1Q15459 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.72■□□□□ 0.91
SF3A1Q15459 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SF3A1Q15459 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.72■□□□□ 0.91
SF3A1Q15459 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 CROCCP1-201ENST00000426910 5675 ntBASIC20.72■□□□□ 0.91
SF3A1Q15459 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.72■□□□□ 0.91
SF3A1Q15459 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SF3A1Q15459 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SF3A1Q15459 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.71■□□□□ 0.91
SF3A1Q15459 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.71■□□□□ 0.91
SF3A1Q15459 SLC25A3P1-201ENST00000443844 931 ntBASIC20.71■□□□□ 0.91
SF3A1Q15459 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.71■□□□□ 0.91
SF3A1Q15459 GCSHP2-201ENST00000560971 527 ntBASIC20.71■□□□□ 0.91
SF3A1Q15459 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.71■□□□□ 0.91
SF3A1Q15459 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms