Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC11.02□□□□□ -0.65
HSPG2P98160 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
HSPG2P98160 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
HSPG2P98160 PIN1P1-201ENST00000412108 996 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 GABARAPL3-202ENST00000624044 1851 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC11.01□□□□□ -0.65
HSPG2P98160 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 CYB561-216ENST00000582297 897 ntTSL 3 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC027307.3-201ENST00000594262 1100 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC11.01□□□□□ -0.65
HSPG2P98160 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 AL158211.5-201ENST00000623583 2518 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC11.01□□□□□ -0.65
HSPG2P98160 FAM185BP-201ENST00000443595 716 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 GATB-205ENST00000508611 605 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
HSPG2P98160 AC005082.1-201ENST00000413042 2259 ntBASIC11.01□□□□□ -0.65
HSPG2P98160 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC11.01□□□□□ -0.65
HSPG2P98160 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC11.01□□□□□ -0.65
HSPG2P98160 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 BAD-207ENST00000544785 525 ntTSL 3 BASIC11□□□□□ -0.65
HSPG2P98160 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC11□□□□□ -0.65
HSPG2P98160 AP001059.3-201ENST00000619053 235 ntBASIC11□□□□□ -0.65
HSPG2P98160 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 AC019129.2-201ENST00000609837 1235 ntBASIC11□□□□□ -0.65
HSPG2P98160 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11□□□□□ -0.65
HSPG2P98160 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC11□□□□□ -0.65
HSPG2P98160 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC11□□□□□ -0.65
HSPG2P98160 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 MED16-214ENST00000617672 554 ntTSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC11□□□□□ -0.65
HSPG2P98160 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC11□□□□□ -0.65
HSPG2P98160 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC11□□□□□ -0.65
HSPG2P98160 HNRNPA1P40-201ENST00000426371 1278 ntBASIC11□□□□□ -0.65
HSPG2P98160 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11□□□□□ -0.65
HSPG2P98160 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC10.99□□□□□ -0.65
HSPG2P98160 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC10.99□□□□□ -0.65
HSPG2P98160 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC10.99□□□□□ -0.65
HSPG2P98160 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HSPG2P98160 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC10.99□□□□□ -0.65
HSPG2P98160 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC10.99□□□□□ -0.65
HSPG2P98160 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HSPG2P98160 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC10.99□□□□□ -0.65
HSPG2P98160 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC10.99□□□□□ -0.65
HSPG2P98160 SPTLC1P1-201ENST00000447199 261 ntBASIC10.99□□□□□ -0.65
HSPG2P98160 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC10.99□□□□□ -0.65
HSPG2P98160 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC10.99□□□□□ -0.65
HSPG2P98160 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC10.99□□□□□ -0.65
HSPG2P98160 AL390754.1-201ENST00000619088 582 ntBASIC10.99□□□□□ -0.65
HSPG2P98160 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC10.99□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms