Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.88■□□□□ 0.61
LIG3P49916 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.88■□□□□ 0.61
LIG3P49916 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIG3P49916 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.87■□□□□ 0.61
LIG3P49916 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.87■□□□□ 0.61
LIG3P49916 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
LIG3P49916 GPAT2P1-201ENST00000444924 1672 ntBASIC18.87■□□□□ 0.61
LIG3P49916 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.87■□□□□ 0.61
LIG3P49916 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.87■□□□□ 0.61
LIG3P49916 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.87■□□□□ 0.61
LIG3P49916 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.87■□□□□ 0.61
LIG3P49916 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.87■□□□□ 0.61
LIG3P49916 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LIG3P49916 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIG3P49916 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.87■□□□□ 0.61
LIG3P49916 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.86■□□□□ 0.61
LIG3P49916 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.86■□□□□ 0.61
LIG3P49916 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 DUX4L26-201ENST00000489078 1255 ntBASIC18.86■□□□□ 0.61
LIG3P49916 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
LIG3P49916 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 AC139887.4-201ENST00000607877 719 ntBASIC18.86■□□□□ 0.61
LIG3P49916 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIG3P49916 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.86■□□□□ 0.61
LIG3P49916 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
LIG3P49916 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIG3P49916 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 AL162741.1-201ENST00000565563 1558 ntBASIC18.85■□□□□ 0.61
LIG3P49916 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 AL596257.1-201ENST00000641463 2694 ntBASIC18.85■□□□□ 0.61
LIG3P49916 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 AC117947.1-201ENST00000427448 529 ntBASIC18.85■□□□□ 0.61
LIG3P49916 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.85■□□□□ 0.61
LIG3P49916 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.85■□□□□ 0.61
LIG3P49916 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LIG3P49916 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms