Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 AC024563.2-201ENST00000603282 481 ntBASIC17.1■□□□□ 0.33
SDC1P18827 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.1■□□□□ 0.33
SDC1P18827 KRT89P-201ENST00000620027 1478 ntBASIC17.1■□□□□ 0.33
SDC1P18827 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.1■□□□□ 0.33
SDC1P18827 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SDC1P18827 SIRPAP1-201ENST00000448467 1770 ntBASIC17.1■□□□□ 0.33
SDC1P18827 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
SDC1P18827 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SDC1P18827 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.09■□□□□ 0.33
SDC1P18827 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.09■□□□□ 0.33
SDC1P18827 AL441883.1-201ENST00000566170 1045 ntBASIC17.09■□□□□ 0.33
SDC1P18827 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SDC1P18827 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC1P18827 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 AC009949.1-201ENST00000623048 1830 ntBASIC17.09■□□□□ 0.33
SDC1P18827 LINC00304-203ENST00000565008 1864 ntBASIC17.09■□□□□ 0.33
SDC1P18827 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SDC1P18827 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 AL391807.1-203ENST00000604392 2365 ntBASIC17.09■□□□□ 0.33
SDC1P18827 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SDC1P18827 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.09■□□□□ 0.33
SDC1P18827 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
SDC1P18827 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.08■□□□□ 0.33
SDC1P18827 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.08■□□□□ 0.33
SDC1P18827 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SDC1P18827 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC1P18827 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC1P18827 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC1P18827 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC1P18827 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.08■□□□□ 0.32
SDC1P18827 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC1P18827 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.08■□□□□ 0.32
SDC1P18827 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.08■□□□□ 0.32
SDC1P18827 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.08■□□□□ 0.32
SDC1P18827 AL136038.4-201ENST00000603606 1261 ntBASIC17.08■□□□□ 0.32
SDC1P18827 AC140113.3-201ENST00000605663 199 ntBASIC17.08■□□□□ 0.32
SDC1P18827 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SDC1P18827 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SDC1P18827 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.08■□□□□ 0.32
SDC1P18827 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC1P18827 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.07■□□□□ 0.32
SDC1P18827 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC1P18827 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC1P18827 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SDC1P18827 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.07■□□□□ 0.32
SDC1P18827 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 SPDYE15P-201ENST00000424157 909 ntBASIC17.07■□□□□ 0.32
SDC1P18827 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 KRT18P65-201ENST00000439811 1286 ntBASIC17.07■□□□□ 0.32
SDC1P18827 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.07■□□□□ 0.32
SDC1P18827 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.07■□□□□ 0.32
SDC1P18827 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SDC1P18827 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDC1P18827 AL138688.1-201ENST00000624851 1594 ntBASIC17.06■□□□□ 0.32
SDC1P18827 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDC1P18827 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.06■□□□□ 0.32
SDC1P18827 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.06■□□□□ 0.32
SDC1P18827 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms