Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LHX3Q9UBR4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 TP73-AS1-210ENST00000637775 1455 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 AC097374.2-201ENST00000618617 1306 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 NUS1P2-201ENST00000417358 873 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 TSPY19P-201ENST00000418461 509 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 TSPY18P-201ENST00000441642 509 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 AC010460.3-201ENST00000511359 1579 ntBASIC18.07■□□□□ 0.48
LHX3Q9UBR4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LHX3Q9UBR4 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 NOC2LP1-202ENST00000452600 2235 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC007967.3-201ENST00000434308 558 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC009533.2-201ENST00000543664 586 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC011467.2-201ENST00000598425 242 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AL732292.2-201ENST00000609649 430 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC114341.1-201ENST00000618070 349 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 AC009949.1-201ENST00000623048 1830 ntBASIC18.06■□□□□ 0.48
LHX3Q9UBR4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LHX3Q9UBR4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.05■□□□□ 0.48
LHX3Q9UBR4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 RCN1P2-201ENST00000398357 915 ntBASIC18.05■□□□□ 0.48
LHX3Q9UBR4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
LHX3Q9UBR4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms