Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 AC104819.1-201ENST00000504587 486 ntBASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 AL353692.3-201ENST00000407031 1396 ntBASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PCDHB18P-201ENST00000524813 2368 ntBASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.35■□□□□ 0.37
CLIP3Q96DZ5 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 AC012615.1-201ENST00000565797 1299 ntBASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 AC008687.5-201ENST00000593746 558 ntBASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLIP3Q96DZ5 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 AL499627.1-201ENST00000569373 2188 ntBASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CLIP3Q96DZ5 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 NUS1P1-201ENST00000446295 882 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 VENTXP7-201ENST00000475503 772 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 AC074051.2-201ENST00000565115 352 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 AC111152.3-201ENST00000569699 673 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 AL592071.1-201ENST00000611956 408 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 AC139713.2-201ENST00000641328 2723 ntBASIC17.33■□□□□ 0.36
CLIP3Q96DZ5 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 Z69720.1-201ENST00000601483 472 ntBASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.32■□□□□ 0.36
CLIP3Q96DZ5 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLIP3Q96DZ5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms