Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM3Q8TF72 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 AC008687.5-201ENST00000593746 558 ntBASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 AL121672.3-201ENST00000608644 468 ntBASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 AC010460.3-201ENST00000511359 1579 ntBASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM3Q8TF72 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 AC022898.2-201ENST00000616822 1312 ntBASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 AC074051.2-201ENST00000565115 352 ntBASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 IFNL4P1-201ENST00000607083 540 ntBASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM3Q8TF72 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.28■□□□□ 0.52
SHROOM3Q8TF72 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms