Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 AC097381.1-201ENST00000429019 1296 ntBASIC15.04■□□□□ -0
CCDC28AQ8IWP9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 AC144831.1-201ENST00000573312 2656 ntBASIC15.04■□□□□ -0
CCDC28AQ8IWP9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CCDC28AQ8IWP9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.03■□□□□ -0
CCDC28AQ8IWP9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AC019069.1-201ENST00000610008 1333 ntBASIC15.03■□□□□ -0
CCDC28AQ8IWP9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CDV3P1-201ENST00000471403 739 ntBASIC15.03■□□□□ -0
CCDC28AQ8IWP9 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 NTF6G-201ENST00000591094 616 ntBASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CCDC28AQ8IWP9 AC092384.3-202ENST00000564646 2873 ntBASIC15.03■□□□□ -0
CCDC28AQ8IWP9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.02■□□□□ -0
CCDC28AQ8IWP9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.02■□□□□ -0
CCDC28AQ8IWP9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms