Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 AC100803.2-201ENST00000562459 1963 ntBASIC20.83■□□□□ 0.93
KRT40Q6A162 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT40Q6A162 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT40Q6A162 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
KRT40Q6A162 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT40Q6A162 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.83■□□□□ 0.93
KRT40Q6A162 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.83■□□□□ 0.93
KRT40Q6A162 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 AC112907.2-201ENST00000448639 330 ntBASIC20.83■□□□□ 0.93
KRT40Q6A162 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.83■□□□□ 0.93
KRT40Q6A162 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.83■□□□□ 0.93
KRT40Q6A162 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.83■□□□□ 0.93
KRT40Q6A162 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
KRT40Q6A162 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KRT40Q6A162 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
KRT40Q6A162 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.83■□□□□ 0.92
KRT40Q6A162 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
KRT40Q6A162 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.83■□□□□ 0.92
KRT40Q6A162 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KRT40Q6A162 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KRT40Q6A162 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
KRT40Q6A162 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
KRT40Q6A162 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
KRT40Q6A162 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
KRT40Q6A162 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.82■□□□□ 0.92
KRT40Q6A162 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KRT40Q6A162 GNAS-203ENST00000306120 1878 ntBASIC20.82■□□□□ 0.92
KRT40Q6A162 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 HBZP1-201ENST00000354915 429 ntBASIC20.82■□□□□ 0.92
KRT40Q6A162 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.82■□□□□ 0.92
KRT40Q6A162 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.82■□□□□ 0.92
KRT40Q6A162 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
KRT40Q6A162 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
KRT40Q6A162 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KRT40Q6A162 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
KRT40Q6A162 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KRT40Q6A162 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
KRT40Q6A162 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT40Q6A162 AC006116.8-202ENST00000587620 1550 ntBASIC20.81■□□□□ 0.92
KRT40Q6A162 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
KRT40Q6A162 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 FDX1P1-201ENST00000449115 551 ntBASIC20.81■□□□□ 0.92
KRT40Q6A162 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.81■□□□□ 0.92
KRT40Q6A162 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
KRT40Q6A162 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT40Q6A162 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.81■□□□□ 0.92
KRT40Q6A162 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.81■□□□□ 0.92
KRT40Q6A162 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
KRT40Q6A162 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.81■□□□□ 0.92
KRT40Q6A162 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
KRT40Q6A162 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KRT40Q6A162 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT40Q6A162 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
KRT40Q6A162 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
KRT40Q6A162 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT40Q6A162 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.8■□□□□ 0.92
KRT40Q6A162 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.8■□□□□ 0.92
KRT40Q6A162 AC083849.1-201ENST00000615227 514 ntBASIC20.8■□□□□ 0.92
KRT40Q6A162 AC004263.2-201ENST00000617183 678 ntBASIC20.8■□□□□ 0.92
KRT40Q6A162 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KRT40Q6A162 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.8■□□□□ 0.92
KRT40Q6A162 LETM1P2-201ENST00000597330 2178 ntBASIC20.8■□□□□ 0.92
KRT40Q6A162 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms