Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COL28A1Q2UY09 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL28A1Q2UY09 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC007613.1-201ENST00000572811 2597 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC092910.1-201ENST00000482027 1129 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 MTDHP3-201ENST00000594186 672 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC011467.4-201ENST00000594891 528 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC010240.3-201ENST00000607688 395 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 Z83851.2-201ENST00000609564 659 ntBASIC17.25■□□□□ 0.35
COL28A1Q2UY09 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COL28A1Q2UY09 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 KRT8P3-201ENST00000519669 1449 ntBASIC17.24■□□□□ 0.35
COL28A1Q2UY09 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 AC004832.2-201ENST00000426397 482 ntBASIC17.24■□□□□ 0.35
COL28A1Q2UY09 AP006288.1-201ENST00000446065 395 ntBASIC17.24■□□□□ 0.35
COL28A1Q2UY09 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.24■□□□□ 0.35
COL28A1Q2UY09 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 AC114341.1-201ENST00000618070 349 ntBASIC17.24■□□□□ 0.35
COL28A1Q2UY09 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL28A1Q2UY09 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms