Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.08■□□□□ 0.16
H3F3AP84243 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.08■□□□□ 0.16
H3F3AP84243 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
H3F3AP84243 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
H3F3AP84243 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
H3F3AP84243 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
H3F3AP84243 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
H3F3AP84243 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.07■□□□□ 0.16
H3F3AP84243 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 GUSBP12-201ENST00000513727 720 ntBASIC16.07■□□□□ 0.16
H3F3AP84243 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.07■□□□□ 0.16
H3F3AP84243 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.07■□□□□ 0.16
H3F3AP84243 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.07■□□□□ 0.16
H3F3AP84243 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.07■□□□□ 0.16
H3F3AP84243 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
H3F3AP84243 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
H3F3AP84243 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
H3F3AP84243 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.06■□□□□ 0.16
H3F3AP84243 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 CHCHD2P8-201ENST00000429873 447 ntBASIC16.06■□□□□ 0.16
H3F3AP84243 MTCL1P1-201ENST00000446207 792 ntBASIC16.06■□□□□ 0.16
H3F3AP84243 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 AC112698.1-201ENST00000510299 916 ntBASIC16.06■□□□□ 0.16
H3F3AP84243 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.06■□□□□ 0.16
H3F3AP84243 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.06■□□□□ 0.16
H3F3AP84243 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 AC007613.1-201ENST00000572811 2597 ntBASIC16.06■□□□□ 0.16
H3F3AP84243 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
H3F3AP84243 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.06■□□□□ 0.16
H3F3AP84243 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.05■□□□□ 0.16
H3F3AP84243 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
H3F3AP84243 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.05■□□□□ 0.16
H3F3AP84243 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
H3F3AP84243 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
H3F3AP84243 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms