Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 Z83836.1-201ENST00000624605 1642 ntBASIC18.78■□□□□ 0.6
HDAC4P56524 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC4P56524 AC067852.2-201ENST00000590513 2313 ntBASIC18.78■□□□□ 0.6
HDAC4P56524 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HDAC4P56524 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.78■□□□□ 0.6
HDAC4P56524 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC4P56524 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC4P56524 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.78■□□□□ 0.6
HDAC4P56524 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.78■□□□□ 0.6
HDAC4P56524 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
HDAC4P56524 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.78■□□□□ 0.6
HDAC4P56524 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 KRT18P55-202ENST00000578578 1546 ntBASIC18.78■□□□□ 0.6
HDAC4P56524 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
HDAC4P56524 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HDAC4P56524 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
HDAC4P56524 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HDAC4P56524 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 KRT18P65-201ENST00000439811 1286 ntBASIC18.77■□□□□ 0.6
HDAC4P56524 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.77■□□□□ 0.6
HDAC4P56524 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.77■□□□□ 0.6
HDAC4P56524 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.77■□□□□ 0.6
HDAC4P56524 AL121956.5-201ENST00000625261 221 ntBASIC18.77■□□□□ 0.6
HDAC4P56524 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HDAC4P56524 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HDAC4P56524 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HDAC4P56524 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
HDAC4P56524 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
HDAC4P56524 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.77■□□□□ 0.59
HDAC4P56524 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.77■□□□□ 0.59
HDAC4P56524 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC4P56524 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC4P56524 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC4P56524 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.77■□□□□ 0.59
HDAC4P56524 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HDAC4P56524 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.76■□□□□ 0.59
HDAC4P56524 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HDAC4P56524 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.76■□□□□ 0.59
HDAC4P56524 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.76■□□□□ 0.59
HDAC4P56524 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.76■□□□□ 0.59
HDAC4P56524 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.76■□□□□ 0.59
HDAC4P56524 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.76■□□□□ 0.59
HDAC4P56524 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HDAC4P56524 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.75■□□□□ 0.59
HDAC4P56524 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HDAC4P56524 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.75■□□□□ 0.59
HDAC4P56524 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDAC4P56524 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.75■□□□□ 0.59
HDAC4P56524 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.75■□□□□ 0.59
HDAC4P56524 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.75■□□□□ 0.59
HDAC4P56524 FAM86EP-206ENST00000510506 987 ntBASIC18.75■□□□□ 0.59
HDAC4P56524 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms