Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 METTL26-205ENST00000397666 726 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC23.55■■□□□ 1.36
COL18A1P39060 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC23.55■■□□□ 1.36
COL18A1P39060 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL18A1P39060 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.54■■□□□ 1.36
COL18A1P39060 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC23.54■■□□□ 1.36
COL18A1P39060 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.54■■□□□ 1.36
COL18A1P39060 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC23.54■■□□□ 1.36
COL18A1P39060 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.54■■□□□ 1.36
COL18A1P39060 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.54■■□□□ 1.36
COL18A1P39060 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.54■■□□□ 1.36
COL18A1P39060 AP002472.1-201ENST00000577490 586 ntBASIC23.54■■□□□ 1.36
COL18A1P39060 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC23.54■■□□□ 1.36
COL18A1P39060 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC23.54■■□□□ 1.36
COL18A1P39060 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.54■■□□□ 1.36
COL18A1P39060 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
COL18A1P39060 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.54■■□□□ 1.36
COL18A1P39060 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL18A1P39060 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.53■■□□□ 1.36
COL18A1P39060 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC23.53■■□□□ 1.36
COL18A1P39060 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC23.53■■□□□ 1.36
COL18A1P39060 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
COL18A1P39060 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
COL18A1P39060 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.53■■□□□ 1.36
COL18A1P39060 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
COL18A1P39060 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 SNHG9-202ENST00000564014 471 ntBASIC23.52■■□□□ 1.36
COL18A1P39060 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 CITED2-204ENST00000618718 901 ntTSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
COL18A1P39060 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC23.52■■□□□ 1.36
COL18A1P39060 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL18A1P39060 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC23.52■■□□□ 1.36
COL18A1P39060 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC23.52■■□□□ 1.36
COL18A1P39060 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC23.52■■□□□ 1.36
COL18A1P39060 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC23.52■■□□□ 1.36
COL18A1P39060 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC23.52■■□□□ 1.36
COL18A1P39060 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC23.52■■□□□ 1.36
COL18A1P39060 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC23.51■■□□□ 1.35
COL18A1P39060 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
COL18A1P39060 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
COL18A1P39060 AC004877.2-201ENST00000623941 599 ntBASIC23.51■■□□□ 1.35
COL18A1P39060 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.51■■□□□ 1.35
COL18A1P39060 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.51■■□□□ 1.35
COL18A1P39060 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.51■■□□□ 1.35
COL18A1P39060 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL18A1P39060 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
COL18A1P39060 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC23.5■■□□□ 1.35
COL18A1P39060 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL18A1P39060 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC23.5■■□□□ 1.35
COL18A1P39060 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
COL18A1P39060 CBR1-202ENST00000399191 838 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 AL035633.1-201ENST00000406139 838 ntBASIC23.5■■□□□ 1.35
COL18A1P39060 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC23.5■■□□□ 1.35
COL18A1P39060 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 CFL1-212ENST00000531413 636 ntTSL 3 BASIC23.5■■□□□ 1.35
COL18A1P39060 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL18A1P39060 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL18A1P39060 AC018445.3-201ENST00000624177 1945 ntBASIC23.5■■□□□ 1.35
COL18A1P39060 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL18A1P39060 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms