Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 AL121761.2-201ENST00000598007 1648 ntBASIC21.69■■□□□ 1.06
BRCA1P38398 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 AC003669.1-201ENST00000334569 611 ntBASIC21.69■■□□□ 1.06
BRCA1P38398 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.69■■□□□ 1.06
BRCA1P38398 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.69■■□□□ 1.06
BRCA1P38398 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 AL137060.1-201ENST00000618151 2648 ntBASIC21.69■■□□□ 1.06
BRCA1P38398 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRCA1P38398 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 HLA-V-201ENST00000429037 534 ntBASIC21.69■■□□□ 1.06
BRCA1P38398 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.69■■□□□ 1.06
BRCA1P38398 DUX4L27-201ENST00000554796 1261 ntBASIC21.69■■□□□ 1.06
BRCA1P38398 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC21.69■■□□□ 1.06
BRCA1P38398 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.69■■□□□ 1.06
BRCA1P38398 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.68■■□□□ 1.06
BRCA1P38398 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
BRCA1P38398 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
BRCA1P38398 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
BRCA1P38398 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.68■■□□□ 1.06
BRCA1P38398 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.68■■□□□ 1.06
BRCA1P38398 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 AC008761.3-201ENST00000624803 892 ntBASIC21.68■■□□□ 1.06
BRCA1P38398 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.68■■□□□ 1.06
BRCA1P38398 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.68■■□□□ 1.06
BRCA1P38398 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.68■■□□□ 1.06
BRCA1P38398 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
BRCA1P38398 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
BRCA1P38398 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
BRCA1P38398 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRCA1P38398 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.67■■□□□ 1.06
BRCA1P38398 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
BRCA1P38398 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.67■■□□□ 1.06
BRCA1P38398 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 CRB3P1-201ENST00000449338 276 ntBASIC21.67■■□□□ 1.06
BRCA1P38398 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.67■■□□□ 1.06
BRCA1P38398 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.67■■□□□ 1.06
BRCA1P38398 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 AL049757.1-201ENST00000616842 1596 ntBASIC21.67■■□□□ 1.06
BRCA1P38398 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BRCA1P38398 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC21.67■■□□□ 1.06
BRCA1P38398 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.67■■□□□ 1.06
BRCA1P38398 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.66■■□□□ 1.06
BRCA1P38398 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.66■■□□□ 1.06
BRCA1P38398 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
BRCA1P38398 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.66■■□□□ 1.06
BRCA1P38398 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.66■■□□□ 1.06
BRCA1P38398 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
BRCA1P38398 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.66■■□□□ 1.06
BRCA1P38398 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRCA1P38398 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
BRCA1P38398 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms