Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 KRT18P56-201ENST00000507275 550 ntBASIC17.62■□□□□ 0.41
CDH3P22223 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
CDH3P22223 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.62■□□□□ 0.41
CDH3P22223 AC005332.3-201ENST00000589904 676 ntBASIC17.62■□□□□ 0.41
CDH3P22223 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH3P22223 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CDH3P22223 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH3P22223 AC016734.2-201ENST00000624325 1377 ntBASIC17.62■□□□□ 0.41
CDH3P22223 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CDH3P22223 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.62■□□□□ 0.41
CDH3P22223 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDH3P22223 AC124067.4-201ENST00000519691 2379 ntBASIC17.61■□□□□ 0.41
CDH3P22223 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CDH3P22223 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CDH3P22223 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.61■□□□□ 0.41
CDH3P22223 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.61■□□□□ 0.41
CDH3P22223 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
CDH3P22223 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.61■□□□□ 0.41
CDH3P22223 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDH3P22223 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDH3P22223 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
CDH3P22223 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH3P22223 ATP5G2P1-201ENST00000433580 426 ntBASIC17.6■□□□□ 0.41
CDH3P22223 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH3P22223 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH3P22223 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH3P22223 GPR32P1-201ENST00000601788 811 ntBASIC17.6■□□□□ 0.41
CDH3P22223 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH3P22223 AC092119.3-201ENST00000612618 583 ntBASIC17.6■□□□□ 0.41
CDH3P22223 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CDH3P22223 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH3P22223 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDH3P22223 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CDH3P22223 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH3P22223 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH3P22223 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH3P22223 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.59■□□□□ 0.41
CDH3P22223 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH3P22223 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CDH3P22223 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CDH3P22223 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH3P22223 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 IGHGP-201ENST00000390555 1178 ntBASIC17.59■□□□□ 0.41
CDH3P22223 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH3P22223 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms