Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SIX3O95343 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SIX3O95343 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.58■□□□□ 0.41
SIX3O95343 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX3O95343 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX3O95343 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 AC087499.1-201ENST00000418141 1075 ntBASIC17.58■□□□□ 0.4
SIX3O95343 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX3O95343 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.58■□□□□ 0.4
SIX3O95343 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.58■□□□□ 0.4
SIX3O95343 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX3O95343 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.58■□□□□ 0.4
SIX3O95343 AL138966.2-201ENST00000621997 464 ntBASIC17.58■□□□□ 0.4
SIX3O95343 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SIX3O95343 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SIX3O95343 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.58■□□□□ 0.4
SIX3O95343 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SIX3O95343 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX3O95343 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX3O95343 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX3O95343 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SIX3O95343 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SIX3O95343 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SIX3O95343 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX3O95343 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SIX3O95343 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX3O95343 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.57■□□□□ 0.4
SIX3O95343 AL023973.1-201ENST00000624619 620 ntBASIC17.57■□□□□ 0.4
SIX3O95343 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.57■□□□□ 0.4
SIX3O95343 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
SIX3O95343 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.57■□□□□ 0.4
SIX3O95343 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SIX3O95343 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
SIX3O95343 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SIX3O95343 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 AP000523.1-201ENST00000398242 1049 ntBASIC17.56■□□□□ 0.4
SIX3O95343 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.56■□□□□ 0.4
SIX3O95343 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 AC145285.6-201ENST00000604632 637 ntBASIC17.56■□□□□ 0.4
SIX3O95343 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SIX3O95343 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SIX3O95343 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SIX3O95343 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.56■□□□□ 0.4
SIX3O95343 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms