Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF40AO75400 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.94■□□□□ 0.94
PRPF40AO75400 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PRPF40AO75400 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PRPF40AO75400 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 MIR149-201ENST00000384879 89 ntBASIC20.93■□□□□ 0.94
PRPF40AO75400 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 AC026271.3-201ENST00000571884 352 ntBASIC20.93■□□□□ 0.94
PRPF40AO75400 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PRPF40AO75400 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.93■□□□□ 0.94
PRPF40AO75400 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PRPF40AO75400 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PRPF40AO75400 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PRPF40AO75400 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PRPF40AO75400 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.92■□□□□ 0.94
PRPF40AO75400 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.92■□□□□ 0.94
PRPF40AO75400 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 AC113410.3-201ENST00000623366 203 ntBASIC20.92■□□□□ 0.94
PRPF40AO75400 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.92■□□□□ 0.94
PRPF40AO75400 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PRPF40AO75400 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.92■□□□□ 0.94
PRPF40AO75400 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PRPF40AO75400 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PRPF40AO75400 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PRPF40AO75400 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PRPF40AO75400 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PRPF40AO75400 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.91■□□□□ 0.94
PRPF40AO75400 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.91■□□□□ 0.94
PRPF40AO75400 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.91■□□□□ 0.94
PRPF40AO75400 CD177P1-201ENST00000606252 935 ntBASIC20.91■□□□□ 0.94
PRPF40AO75400 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.91■□□□□ 0.94
PRPF40AO75400 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.91■□□□□ 0.94
PRPF40AO75400 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PRPF40AO75400 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC20.9■□□□□ 0.94
PRPF40AO75400 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PRPF40AO75400 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 B3GAT3P1-201ENST00000471720 806 ntBASIC20.9■□□□□ 0.94
PRPF40AO75400 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.9■□□□□ 0.94
PRPF40AO75400 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.9■□□□□ 0.94
PRPF40AO75400 MIR6786-201ENST00000616843 113 ntBASIC20.9■□□□□ 0.94
PRPF40AO75400 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
PRPF40AO75400 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.9■□□□□ 0.94
PRPF40AO75400 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PRPF40AO75400 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms