Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF40O75150 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF40O75150 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
RNF40O75150 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF40O75150 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF40O75150 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF40O75150 STARP1-201ENST00000397973 869 ntBASIC19.41■□□□□ 0.7
RNF40O75150 AL450487.1-201ENST00000426799 995 ntBASIC19.41■□□□□ 0.7
RNF40O75150 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.41■□□□□ 0.7
RNF40O75150 CLEC4GP1-201ENST00000596555 870 ntBASIC19.41■□□□□ 0.7
RNF40O75150 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.41■□□□□ 0.7
RNF40O75150 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 FEM1AP3-201ENST00000403722 1741 ntBASIC19.41■□□□□ 0.7
RNF40O75150 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 AL139384.1-201ENST00000612143 3047 ntBASIC19.41■□□□□ 0.7
RNF40O75150 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.41■□□□□ 0.7
RNF40O75150 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
RNF40O75150 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF40O75150 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF40O75150 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF40O75150 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RNF40O75150 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF40O75150 AC104417.2-201ENST00000562989 1793 ntBASIC19.4■□□□□ 0.7
RNF40O75150 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
RNF40O75150 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF40O75150 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF40O75150 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF40O75150 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF40O75150 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.4■□□□□ 0.7
RNF40O75150 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF40O75150 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF40O75150 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF40O75150 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.4■□□□□ 0.7
RNF40O75150 HYMAI.1-201ENST00000620949 238 ntBASIC19.4■□□□□ 0.7
RNF40O75150 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RNF40O75150 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.4■□□□□ 0.7
RNF40O75150 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF40O75150 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF40O75150 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF40O75150 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.39■□□□□ 0.7
RNF40O75150 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF40O75150 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF40O75150 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF40O75150 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF40O75150 SPDYE15P-201ENST00000424157 909 ntBASIC19.39■□□□□ 0.69
RNF40O75150 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF40O75150 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF40O75150 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.39■□□□□ 0.69
RNF40O75150 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.39■□□□□ 0.69
RNF40O75150 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF40O75150 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF40O75150 MIR4674-201ENST00000582457 87 ntBASIC19.39■□□□□ 0.69
RNF40O75150 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF40O75150 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF40O75150 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
RNF40O75150 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms