Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 AP000593.1-201ENST00000393668 712 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 AC106795.1-205ENST00000512851 1056 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 AC011840.4-201ENST00000578471 627 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 AC138894.3-201ENST00000603787 634 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 AL353801.3-201ENST00000609898 542 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 IRX1P1-201ENST00000438849 1838 ntBASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.65■□□□□ 0.42
TMX2-CTNND1H3BSU7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.42
TMX2-CTNND1H3BSU7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TMX2-CTNND1H3BSU7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.64■□□□□ 0.42
TMX2-CTNND1H3BSU7 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
TMX2-CTNND1H3BSU7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 POM121L3P-201ENST00000419331 1163 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 IGHV3-47-201ENST00000425060 335 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 RN7SL606P-201ENST00000472779 293 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 LINC00167-201ENST00000530583 1419 ntBASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.64■□□□□ 0.41
TMX2-CTNND1H3BSU7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL139384.1-201ENST00000612143 3047 ntBASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC009078.2-202ENST00000463353 338 ntBASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC068587.9-201ENST00000641814 219 ntBASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL353692.3-201ENST00000407031 1396 ntBASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms