Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AC233702.5-201ENST00000584107 538 ntBASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 AC026471.5-201ENST00000615068 467 ntBASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 PRORSD1P-201ENST00000295112 541 ntBASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 AC084018.2-201ENST00000613093 2607 ntBASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 AL138688.1-201ENST00000624851 1594 ntBASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM49D1C9J1S8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 CROCCP2-202ENST00000412962 2773 ntBASIC18.02■□□□□ 0.47
TRIM49D1C9J1S8 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 AC092338.2-201ENST00000568827 1415 ntBASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 AC010240.3-201ENST00000607688 395 ntBASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
TRIM49D1C9J1S8 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM49D1C9J1S8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms