Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 ECEL1P2-202ENST00000465689 757 ntBASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.62■□□□□ 0.25
CPSF4LA6NMK7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 OR6D1P-203ENST00000641209 4860 ntBASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 MMP23A-201ENST00000234610 1017 ntBASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPSF4LA6NMK7 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPSF4LA6NMK7 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 AC132938.6-201ENST00000623828 1655 ntBASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 AC106820.2-201ENST00000563775 3264 ntBASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.59■□□□□ 0.25
CPSF4LA6NMK7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms