Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
ZC3H4Q9UPT8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
ZC3H4Q9UPT8 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
ZC3H4Q9UPT8 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
ZC3H4Q9UPT8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
ZC3H4Q9UPT8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 GK-202ENST00000378941 458 ntTSL 3 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 PMS2P4-201ENST00000412466 1052 ntBASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 AC015922.1-201ENST00000421102 1152 ntBASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 AC122714.2-201ENST00000502787 707 ntBASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 AC010654.1-201ENST00000615722 808 ntBASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
ZC3H4Q9UPT8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 AC087641.1-201ENST00000557561 1021 ntBASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.66■■□□□ 1.06
ZC3H4Q9UPT8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 AC005225.4-201ENST00000557330 545 ntBASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 SDHAP2-201ENST00000455183 2001 ntBASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
ZC3H4Q9UPT8 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZC3H4Q9UPT8 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZC3H4Q9UPT8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.64■■□□□ 1.05
ZC3H4Q9UPT8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.64■■□□□ 1.05
ZC3H4Q9UPT8 IGLL3P-201ENST00000412472 434 ntBASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms