Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 AL645929.1-201ENST00000420084 975 ntBASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 RNF126P1-202ENST00000569893 925 ntBASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 NTF6B-201ENST00000591913 560 ntBASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
AP4E1Q9UPM8 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 AL353692.3-201ENST00000407031 1396 ntBASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 TSPY12P-201ENST00000421279 868 ntBASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 AC005332.3-201ENST00000589904 676 ntBASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 AL390719.2-201ENST00000606993 987 ntBASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
AP4E1Q9UPM8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 Z83836.1-201ENST00000624605 1642 ntBASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 LETM1P2-201ENST00000597330 2178 ntBASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AL031133.1-201ENST00000406807 723 ntBASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AC134043.2-201ENST00000624206 2238 ntBASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.67■□□□□ 0.58
AP4E1Q9UPM8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
AP4E1Q9UPM8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms