Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC27.08■■□□□ 1.93
COL17A1Q9UMD9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.92
COL17A1Q9UMD9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC27.08■■□□□ 1.92
COL17A1Q9UMD9 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 DDT-204ENST00000404092 805 ntTSL 3 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 CRB3P1-201ENST00000449338 276 ntBASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 PWWP2AP1-201ENST00000429776 2273 ntBASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
COL17A1Q9UMD9 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 AC122714.2-201ENST00000502787 707 ntBASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC27.06■■□□□ 1.92
COL17A1Q9UMD9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 AC092919.2-201ENST00000623631 1645 ntBASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC27.05■■□□□ 1.92
COL17A1Q9UMD9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 NAA50-208ENST00000497255 789 ntTSL 5 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 AC068137.2-201ENST00000605408 478 ntBASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
COL17A1Q9UMD9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 BID-204ENST00000399767 2129 ntTSL 2 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 NCF1C-201ENST00000438382 1427 ntBASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 BASP1P1-201ENST00000430708 665 ntBASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 CR383656.12-201ENST00000549567 513 ntBASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 AC073592.5-201ENST00000624854 528 ntBASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC27.03■■□□□ 1.92
COL17A1Q9UMD9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC27.03■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms