Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 AL157888.1-201ENST00000631930 593 ntBASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 AC113404.2-201ENST00000507884 177 ntBASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 AL512604.3-201ENST00000569583 964 ntBASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMA1Q9UHB6 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 REXO1L11P-201ENST00000620964 1927 ntBASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMA1Q9UHB6 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMA1Q9UHB6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.64■□□□□ 0.74
LIMA1Q9UHB6 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMA1Q9UHB6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC19.64■□□□□ 0.74
LIMA1Q9UHB6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 HMGA1P5-201ENST00000412453 271 ntBASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 NAPSB-206ENST00000562112 1266 ntBASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 LINC01451-201ENST00000623792 534 ntBASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 AC009949.1-201ENST00000623048 1830 ntBASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
LIMA1Q9UHB6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms