Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC39Q9UFE4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 CYP2D8P-201ENST00000433633 1490 ntBASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CCDC39Q9UFE4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 AC010947.1-201ENST00000623454 693 ntBASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 KRT8P7-201ENST00000533003 1432 ntBASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 KRT8P9-201ENST00000558927 1449 ntBASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 KRT8P50-201ENST00000562022 1438 ntBASIC20.83■□□□□ 0.93
CCDC39Q9UFE4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC39Q9UFE4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 HOXB1-202ENST00000577092 1414 ntBASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 AC011676.5-201ENST00000624864 2660 ntBASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 AC022211.2-201ENST00000585075 2527 ntBASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC39Q9UFE4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 KRT18P23-201ENST00000435622 1283 ntBASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 AL118508.1-201ENST00000613502 2345 ntBASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC39Q9UFE4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC39Q9UFE4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms