Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
BRF2Q9HAW0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 HOMER2P1-201ENST00000455653 964 ntBASIC17.22■□□□□ 0.35
BRF2Q9HAW0 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 LINC01023-201ENST00000606054 436 ntBASIC17.22■□□□□ 0.35
BRF2Q9HAW0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
BRF2Q9HAW0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 RNF152P1-201ENST00000397754 604 ntBASIC17.21■□□□□ 0.35
BRF2Q9HAW0 TSPY5P-201ENST00000426936 936 ntBASIC17.21■□□□□ 0.35
BRF2Q9HAW0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.21■□□□□ 0.35
BRF2Q9HAW0 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.21■□□□□ 0.34
BRF2Q9HAW0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.21■□□□□ 0.34
BRF2Q9HAW0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
BRF2Q9HAW0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
BRF2Q9HAW0 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 AC211429.1-201ENST00000415277 523 ntBASIC17.2■□□□□ 0.34
BRF2Q9HAW0 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 AC009154.2-201ENST00000621177 724 ntBASIC17.2■□□□□ 0.34
BRF2Q9HAW0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BRF2Q9HAW0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms