Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 AC073648.2-201ENST00000510116 352 ntBASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 AC097374.2-201ENST00000618617 1306 ntBASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PAAF1Q9BRP4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 FAM220CP-201ENST00000395253 831 ntBASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 AC096633.1-201ENST00000422446 749 ntBASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 DUTP2-201ENST00000519164 463 ntBASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 AC100803.2-201ENST00000562459 1963 ntBASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
PAAF1Q9BRP4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 SCARNA2-201ENST00000458748 420 ntBASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 AP000867.4-201ENST00000641616 219 ntBASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.12■□□□□ 0.65
PAAF1Q9BRP4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AL138781.2-201ENST00000617896 1843 ntBASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 RPS2P1-201ENST00000434010 821 ntBASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 NKAPP1-205ENST00000585790 367 ntBASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AL356309.3-201ENST00000624132 1934 ntBASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.11■□□□□ 0.65
PAAF1Q9BRP4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms