Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 TSPY12P-201ENST00000421279 868 ntBASIC20.88■□□□□ 0.93
TRERF1Q96PN7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRERF1Q96PN7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 NUS1P2-201ENST00000417358 873 ntBASIC20.87■□□□□ 0.93
TRERF1Q96PN7 KRT16P4-201ENST00000453883 522 ntBASIC20.87■□□□□ 0.93
TRERF1Q96PN7 AC009078.2-202ENST00000463353 338 ntBASIC20.87■□□□□ 0.93
TRERF1Q96PN7 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.87■□□□□ 0.93
TRERF1Q96PN7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRERF1Q96PN7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 ANO7L1-203ENST00000602586 1720 ntBASIC20.86■□□□□ 0.93
TRERF1Q96PN7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.86■□□□□ 0.93
TRERF1Q96PN7 LINC01126-201ENST00000623515 1646 ntBASIC20.86■□□□□ 0.93
TRERF1Q96PN7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 AL160237.2-201ENST00000556165 472 ntBASIC20.85■□□□□ 0.93
TRERF1Q96PN7 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRERF1Q96PN7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms